Aivia 3D
Image Analysis for 3D and 3D Plus Time Applications

What You Get

Aivia Base

The backbone of all Aivia packages. It features high performance volume and surface rendering engines capable of handling even the most demanding (multi-terabyte, multi-channel time series) microscopy datasets. It offers a wide range of visualization models which enables you to explore your data. Basic quantitative options such as Measurement, Spreadsheet, Charts and Annotations are also included with Aivia Base.

Machine Learning Pixel Classifier

You can train a machine learning model to distinguish objects of interest from background. The Pixel Classifier provides a powerful way to detect objects in images where conventional threshold-based methods are not enough.

3D Object Count

The 3D Object Analysis recipe in Aivia detects objects (such as cells and nuclei) and generates surface reconstructions of the objects in 3D volumetric images. The recipe provides a count of the number of detected objects as well as morphological and intensity measurements of individual objects.

3D Object Tracking

The 3D Object Tracking recipe in Aivia detects objects (such as cells and nuclei), generates surface reconstructions, and tracks their movement in 3D+time volumetric images. The recipe also tracks cell division events to create lineages for cell fate analysis. The recipe provides a count of the number of detected objects as well as morphological, intensity and motility measurements of the detected objects.

Track and Lineage Editing

Edit tracking analysis results using the Track and Lineage Editor. It features a simple single-button control scheme that allows you to drag-and-drop track points to connect tracks, disconnect tracks and create lineages. All the changes are updated automatically in measurements.

The Aivia 3D package is for researchers looking for automated analysis solutions for 3D and 3D+time applications. The software is designed to work with huge datasets to give you accurate analysis results. With multi-resolution rendering and fast surfaces, you can display and interact with your data in seconds. Our analysis recipes detect and track objects (cells, nuclei, organelles, particles, etc.) automatically and can be easily adjusted to your datasets. You also have access to a wide range of morphological, intensity, motion and lineage measurements with the recipes for comprehensive analysis of your data.

Features at-a-glance
  • Display and work with huge (100s GBs) datasets
  • Complete analysis pipelines for 3D object detection and tracking
  • Detect 3D objects (e.g. cells, nuclei, organelles, particles, etc.)
  • Track 3D objects and lineages, including cell division and fate analysis
  • Access a wide range of morphology, intensity and motion measurements
  • Two (2) years of technical support plus software updates included


Aivia's image analysis solutions automatically calculate many measurements for all detected objects as well as statistics about the entire population. You can explore the data further using the built-in Charts in Aivia and classify objects of interest using our machine learning object classifier tool.

Here are some common measurements that Aivia provides:

3D Surfaces
  • Surface Area

  • Volume

  • Intensity

  • Position (x, y, z)

  • Sphericity

  • Count

Motility and Lineage
  • Total Time

  • Velocity

  • Acceleration

  • Lineage Length

  • Current Lineage Generation


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